PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr5P09530_001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bHLH
Protein Properties Length: 223aa    MW: 24690.4 Da    PI: 5.1683
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr5P09530_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH452e-145398555
                           HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH  5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                           +  +ErrRR+++N ++  Lr l+P+      +K+sK ++L+ A+ YIk+Lq
  GSMUA_Achr5P09530_001 53 NLDAERRRRNKLNAKLLALRALVPNI-----TKMSKESTLTDAISYIKQLQ 98
                           5579*********************7.....7******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000839.97E-124695No hitNo description
PROSITE profilePS5088816.3674897IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.81E-1848110IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.8E-125298IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.8E-1654103IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.1E-1655111IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MPPRRPRDPA VGLAPEADPM DFIDAVLDGL GDDFCGQPGP PEVPAETRYK SKNLDAERRR  60
RNKLNAKLLA LRALVPNITK MSKESTLTDA ISYIKQLQQQ VLELQIELSK IPDEDGEKQG  120
SASSTETMAP LETVQLQGKV ELNPIGKTKY HLEMIYKNIT GAFTRLLEAL HRMGAEVTTV  180
SSVAFSGFSE TVFCLEVKDE GVIHMTELRQ QLLAIVLNLN CTI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009400555.11e-149PREDICTED: transcription factor ABORTED MICROSPORES
SwissprotB9FXT31e-47UDT1_ORYSJ; Transcription factor UDT1
TrEMBLM0SX321e-165M0SX32_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr5P09530_0011e-164(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP119823036
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16910.14e-10bHLH family protein